coli, Listeria, Salmonella and Staphylococcus aureus genotyping plugins were extended with a species confirmation feature using minhashing, which checks if an isolate is indeed a target organism for the plugin. This feature is implemented on the Calculation Engine via the open source Unicycler de novo assembler. ![]() ![]() In addition to hybrid assembly (i.e., combining short and long reads in a single assembly) that was introduced earlier, it is now possible to perform long read only assemblies on e.g. This new feature greatly facilitates the import process and makes it more intuitive by eliminating the need to select the required import routine in the tree overview with all possible imports. ![]() The import wizard now includes an additional dialog that allows you to browse for your data files and suggests suitable import routines, based on file type and content. Similar as for the MLST for Sanger sequencing plugin (formerly known as the “MLST online plugin”), the MLST for WGS plugin allows you to select MLST schemes from an online list and to create and maintain custom MLST schemes. Based on the genotyping framework, it performs a fast, accurate and complete allele calling and allows running multiple MLST schemes in a single database. New functionality in version 8.1.1 build 4: New MLST for WGS pluginĪs the name suggests, the new MLST for WGS plugin is specifically designed for performing MLST analysis with whole genome sequences as input.
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